PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S11523.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 825aa    MW: 92394.9 Da    PI: 7.0945
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S11523.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.9e-1893142355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y GVr+++ +g ++AeIrdp++ng  +r++lg++ t+e+Aa a+++a+ +++g
  Jcr4S11523.10  93 YIGVRRRP-WGTYAAEIRDPKKNG--ARVWLGTYETPEDAAVAYDRAAFEMRG 142
                    89******.***********9998..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.3E-3592156IPR001471AP2/ERF domain
CDDcd000187.44E-2892152No hitNo description
Gene3DG3DSA:3.30.730.108.3E-3092151IPR001471AP2/ERF domain
PROSITE profilePS5103222.48492150IPR001471AP2/ERF domain
PRINTSPR003672.7E-1093104IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2193151IPR016177DNA-binding domain
PfamPF008472.0E-1193142IPR001471AP2/ERF domain
PRINTSPR003672.7E-10132152IPR001471AP2/ERF domain
PfamPF142231.4E-15282357No hitNo description
PfamPF077273.0E-5790825IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    Send to blast
MQVQSSSGSM LTSLLESIRN HLLADDFEDP CTATASLLSY TSEWFSSLQL NSVNELSMVV  60
EQESPSIDVG SKAAVPVPVA RPNHTPPLRR RNYIGVRRRP WGTYAAEIRD PKKNGARVWL  120
GTYETPEDAA VAYDRAAFEM RGSKAKLNFP HLIGSDNVEP ARLSHKRRVP ESSSLAVKSS  180
GSPKRRKGNK NPVEELQYGV EPLFLGDQSM VNSIVCDASI SNTFTLVYLE FDMANDGAMI  240
KLTDSNYSMW KSRMEDYLNC KDLYDPIKGD SAKPEEMKER QWDKLKKQAL GKVFMIRKVM  300
NLKLSEGRSV TQHLNDFEGL VAELAVSGMS LDDEMQACLL LGFLPDSWDT LVSYEEETSP  360
VPVHKPLSQR IGAGARVEVT GMKSQVDNVN RRQENDRNTS ATVSVEDGEV TLVTHDADCC  420
HVGDADTEWI LDSGASYHCV PKMKYFFTYK AGDFGTIRTG NKSLSQMVGI GNVCIKTSVG  480
CTLILKNVRL IPDLRLNLLS VSVLDKEGYH HHIGDVANDA SPNLGRRWLA HVSEKGSNML  540
AKKSLIPLAK GKKNPCDHCI FGKQHRVSFQ KSSRRRDNKL KMANLSKPFW EESVNTAVYL  600
INRLPSAPLD FDIPEKVWTC KNISYSHLRV FGCKAFMHVP KEQRSKLDDK SVPCTFVDTT  660
CKESTSDGVI DITLGSIPID DVTRGGMPES EREEEEKPVM GDQETIVDDN NDAEGIEKGE  720
PENPVPPEGV EPQLRRSTRE CQPSTKYLSS DYILISDEGE PKSFQDVQSC KDKDCWTKAM  780
QEEMNSLKKN DTYKLVKLPK GKRTLKNKWV HKLKKDDGNL VRYKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2891150160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165186KRRVPESSSLAVKSSGSPKRRK
2282287DKLKKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotP109783e-59POLX_TOBAC; Retrovirus-related Pol polyprotein from transposon TNT 1-94
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-41ethylene-responsive element binding factor 13